Bump dependencies (#807)

doc/misc/changelog.md

@@ -58,6 +58,8 @@ Dependencies
 
 * Bump `pillow` version in doc/requirements.txt.
   {pr}`763`
+* Bump all lib dependencies and some doc dependencies.
+  {pr}`807`
 
 ## 0.15.2
 

doc/requirements.txt

@@ -46,7 +46,7 @@ demes==0.1.2
     # via
     #   demesdraw
     #   msprime
-demesdraw==0.1.3
+git+git://github.com/grahamgower/demesdraw
     # via -r requirements.in
 docutils==0.16
     # via
@@ -182,7 +182,7 @@ nested-lookup==0.2.22
     # via jupyter-book
 newick==1.3.0
     # via msprime
-notebook==6.2.0
+notebook==6.4.3
     # via
     #   nbdime
     #   widgetsnbextension

requirements.txt

@@ -1,21 +1,19 @@
 #
-# This file is autogenerated by pip-compile
+# This file is autogenerated by pip-compile with python 3.8
 # To update, run:
 #
 #    pip-compile
 #
-apipkg==1.5
-    # via execnet
 appdirs==1.4.4
     # via black
-attrs==20.3.0
+attrs==21.2.0
     # via
     #   -r requirements.in
     #   demes
     #   flake8-bugbear
     #   jsonschema
     #   pytest
-black==21.5b2
+black==21.7b0
     # via
     #   -r requirements.in
     #   blacken-docs
@@ -27,29 +25,29 @@ demes==0.1.2
     # via
     #   -r requirements.in
     #   msprime
-execnet==1.8.1
+execnet==1.9.0
     # via pytest-xdist
-flake8-bugbear==21.4.3
-    # via -r requirements.in
 flake8==3.9.2
     # via
     #   -r requirements.in
     #   flake8-bugbear
+flake8-bugbear==21.4.3
+    # via -r requirements.in
 iniconfig==1.1.1
     # via pytest
 jsonschema==3.2.0
     # via tskit
-llvmlite==0.36.0
+llvmlite==0.37.0
     # via numba
 mccabe==0.6.1
     # via flake8
-msprime==1.0.1
+msprime==1.0.2
     # via -r requirements.in
 mypy-extensions==0.4.3
     # via black
 newick==1.3.0
     # via msprime
-numba==0.53.1
+numba==0.54.0
     # via sparse
 numpy==1.20.3
     # via
@@ -59,44 +57,44 @@ numpy==1.20.3
     #   scipy
     #   sparse
     #   tskit
-packaging==20.9
+packaging==21.0
     # via pytest
-pathspec==0.8.1
+pathspec==0.9.0
     # via black
 pluggy==0.13.1
     # via pytest
 py==1.10.0
     # via
     #   pytest
     #   pytest-forked
-pybind11-global==2.6.2
-    # via pybind11
-pybind11[global]==2.6.2
+pybind11[global]==2.7.1
     # via -r requirements.in
+pybind11-global==2.7.1
+    # via pybind11
 pycodestyle==2.7.0
     # via flake8
 pyflakes==2.3.1
     # via flake8
 pyparsing==2.4.7
     # via packaging
-pyrsistent==0.17.3
+pyrsistent==0.18.0
     # via jsonschema
-pytest-forked==1.3.0
-    # via pytest-xdist
-pytest-xdist==2.2.1
-    # via -r requirements.in
 pytest==6.2.4
     # via
     #   -r requirements.in
     #   pytest-forked
     #   pytest-xdist
-regex==2021.4.4
+pytest-forked==1.3.0
+    # via pytest-xdist
+pytest-xdist==2.3.0
+    # via -r requirements.in
+regex==2021.8.21
     # via black
-ruamel.yaml.clib==0.2.2
-    # via ruamel.yaml
-ruamel.yaml==0.17.7
+ruamel.yaml==0.17.13
     # via demes
-scipy==1.6.3
+ruamel.yaml.clib==0.2.6
+    # via ruamel.yaml
+scipy==1.7.1
     # via
     #   -r requirements.in
     #   sparse
@@ -109,10 +107,10 @@ sparse==0.12.0
 svgwrite==1.4.1
     # via tskit
 toml==0.10.2
-    # via
-    #   black
-    #   pytest
-tskit==0.3.6
+    # via pytest
+tomli==1.2.1
+    # via black
+tskit==0.3.7
     # via
     #   -r requirements.in
     #   msprime