merge dev #1174
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merge dev #1174
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molpopgen
commented
Aug 17, 2023
molpopgen
commented
- Restore C++ side individual metadata from trees files. (Restore individual metadata #1157)
- Remove C++ source file whose contents are not used. (Remove C++ source file whose contents are not used. #1159)
- Add new macOS work flow that doesn't use conda (Add new macOS work flow that doesn't use conda #1162)
- Changes to fwdpy11.conditional_models: (Refactor conditional models API. #1161)
- Update return value of conditional models. (Improve behavior of conditional models when pruning selected fixations from simulation. #1163)
- CI updates: (Streamline when CI checks are run. #1164)
- Add test of tree iterator with two sample lists. (Add test of tree iterator with two sample lists. #1165)
- Update change log (Update change log #1168)
- Restore Py 3.8/3.9 for macOS/x86 CI (Restore Py 3.8/3.9 for macOS/x86 CI #1169)
- Remove more workflow runs on push (Remove more workflow runs on push #1170)
- bump pybind11 to 2.11.1 (bump pybind11 to 2.11.1 #1172)
- Bump Ubuntu docker image to 22.04 for CI. (Bump Ubuntu docker image to 22.04 for CI. #1173)
This code started emitting a compiler warning, but the function is not covered by existing tests because it is not part of the public API. Fixes #1158
* Add new macOS work flow that doesn't use conda * Delete conda-based CI
* SimulationStatus is now an enum. * Simplify implementations of some of the condition monitors. * Update vignette Closes #934
* mutation_index is now Optional[int] * added fixation_index, which is Optional[int] * Added tests of prune_selected = True * Update vignettes * Add auto-attribute docs for a population's fixation and fixation time properties Closes #1160
* rename some of the jobs * reduce CI runs on push to main/dev * reduce CI runs for PRs into dev for tasks that are more appropriate for PRs into main
* bump pybind11 to 2.11.1 * Bump minimum cmake to 3.27 * Bump pybind11 version in root CMakeLists.txt * Remove unused define from cmake_args in setup.py * minor updates to Python build files
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