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I thought at first it was related to #214, but it turns out this is because gene definitions are fetched on the client/browser by querying mygene, so these do not make it into solr. Cystic fibrosis does not appear in the solr document at any other point (ie synonym), https://solr-dev.monarchinitiative.org/solr/search/select/?q=*:*&fq=id:%22HGNC:1884%22&wt=json
possible solutions:
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Looking at this closer, it looks like we only index synonyms on the clique leader id, but not those on equivalent Ids, which have additional synonyms, see https://api-dev.monarchinitiative.org/api/graph/edges/from/HGNC:1884?relationship_type=equivalentClass
If we were to index the synonyms from equivalent ids then we would get CFTR when searching for cystic fibrosis.
Relocating this to the solr loader
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Reopening on the UI side since this is still an issue, another example is BRCA1 and breast cancer
I added synonyms of equivalent terms to our search index with SciGraph/golr-loader@ef14285
This adds labels that should help with this issue, for example: CFTR: cystic fibrosis transmembrane conductance regulator
BRCA1: breast cancer type 1 susceptibility protein
However, this hasn't entirely helped
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I thought at first it was related to #214, but it turns out this is because gene definitions are fetched on the client/browser by querying mygene, so these do not make it into solr. Cystic fibrosis does not appear in the solr document at any other point (ie synonym), https://solr-dev.monarchinitiative.org/solr/search/select/?q=*:*&fq=id:%22HGNC:1884%22&wt=json
possible solutions:
The text was updated successfully, but these errors were encountered: