@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

Pinned repositories

  1. monarch-app

    Monarch web application and API

    JavaScript 38 34

  2. dipper

    Data Ingestion Pipeline for SciGraph

    Python 21 10

  3. phenogrid

    The phenogrid widget

    JavaScript 8 10

  4. SEPIO-ontology

    Ontology for representing scientific evidence and provenance information

    10 3

  5. owlsim-v3

    Ontology Based Profile Matching

    JavaScript 5 4

  6. mondo

    Pipeline for building mondo

    Jupyter Notebook 6 2

  • phenol: Phenotype ontology library

    Java 2 1 Updated Aug 18, 2018
  • Ontology for representing scientific evidence and provenance information

    10 3 Updated Aug 17, 2018
  • PhenoteFX

    Java 1 BSD-3-Clause Updated Aug 17, 2018
  • Data Ingestion Pipeline for SciGraph

    Python 21 10 BSD-3-Clause Updated Aug 17, 2018
  • HPO Annotation QC

    Java 1 MIT Updated Aug 17, 2018
  • Repository for representing genotypes and their association with phenotypes

    3 1 Updated Aug 16, 2018
  • Pipeline for building mondo

    Jupyter Notebook 6 2 4 issues need help Updated Aug 16, 2018
  • Toolkit for analyzing subsets of hpo terms

    Python Updated Aug 15, 2018
  • Java library to map LOINC-encoded test results to Human Phenotype Ontology

    Java 3 2 BSD-3-Clause Updated Aug 2, 2018
  • static files for HPO website

    1 BSD-3-Clause Updated Aug 1, 2018
  • Identifier equivalency service

    1 BSD-3-Clause Updated Jul 31, 2018
  • Ontology Based Profile Matching

    JavaScript 5 4 Updated Jul 26, 2018
  • Java 2 4 Updated Jul 25, 2018
  • Monarch web application and API

    JavaScript 38 34 BSD-3-Clause 4 issues need help Updated Jul 21, 2018
  • 1 1 Updated Jul 20, 2018
  • Build two Docker images with the monarch configs. Uses master HEAD from the SciGraph github repo.

    1 Updated Jul 20, 2018
  • Phenotype Compare

    HTML 1 1 BSD-3-Clause Updated Jul 17, 2018
  • store artifacts generated ingesting Monarch's sources via Dipper

    HTML Updated Jun 15, 2018
  • Makefile 1 1 Updated Jun 14, 2018
  • Top level monarch importer ontology

    Makefile 1 1 Updated May 14, 2018
  • Jupyter Notebook 2 1 Apache-2.0 Updated May 1, 2018
  • Scripts to analyze monarch data sets and scigraph

    Jupyter Notebook 1 1 Updated Apr 30, 2018
  • THIS IS THE OLD REPO: Use this one instead: https://github.com/monarch-initiative/mondo-build

    Prolog 9 5 Updated Apr 22, 2018
  • Docker image to create the solr index for the search core.

    Shell 1 BSD-3-Clause Updated Apr 1, 2018
  • Fanconi Anemia INCAForm site

    Updated Mar 29, 2018
  • Generates a solr index of plain language terms in the HPO and their grouping classes

    Python 2 Updated Mar 22, 2018
  • 1 Updated Mar 14, 2018
  • Patient self-phenotyping tools and project management

    Updated Mar 2, 2018
  • Perform text mining for identification of HPO terms in free text from scientific publication.

    Java 2 1 Updated Feb 27, 2018
  • Utility to generate a schema.xml from a yaml config file.

    Java 1 2 BSD-3-Clause Updated Feb 3, 2018