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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

Pinned

  1. mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 157 37

  2. koza Public

    Data transformation framework for LinkML data models

    Python 26 3

  3. MAxO Public

    Medical action ontology

    HTML 30 5

  4. helpdesk Public

    The Monarch Initiative Helpdesk

    4

  5. Data ingest application for Monarch Initiative using Koza

    Python 5 1

  6. WORK IN PROGRESS - redesign of the Monarch UI application

    Vue 5

Repositories

  • monarch-py Public

    Monarch Python API

    Python 0 0 8 1 Updated Feb 2, 2023
  • Makefile 5 0 14 1 Updated Feb 2, 2023
  • monarch-qc Public

    WORK IN PROGRESS - new effort at implementing a QC Dashboard for the Monarch KG and Ingest

    TypeScript 0 MIT 0 7 0 Updated Feb 1, 2023
  • mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 157 CC-BY-4.0 37 194 (6 issues need help) 13 Updated Feb 1, 2023
  • monarch-ingest Public

    Data ingest application for Monarch Initiative using Koza

    Python 5 1 71 3 Updated Feb 1, 2023
  • pheval.exomiser Public

    This is the Exomiser plugin for PhEval. Highly experimental.

    Python 0 0 2 0 Updated Feb 1, 2023
  • omim Public

    Data ingest pipeline for OMIM.

    Python 4 2 35 0 Updated Feb 1, 2023
  • monarch-stack Public

    Specification for building monarch with docker-compose

    Makefile 0 1 0 0 Updated Jan 31, 2023
  • pheval Public

    There is currently no empirical framework to evaluate the performance of phenotype matching and prioritization tools, much needed to guide tuning for cross species inference. Many algorithms are evaluated using simulations, which may fail to capture real-world scenarios. This gap presents a number of problems: it is difficult to optimize algorit…

    Python 4 Apache-2.0 0 25 5 Updated Jan 31, 2023
  • boomer-examples Public

    For testing and debugging purposes of boomer

    Makefile 0 0 3 1 Updated Jan 30, 2023

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