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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 237 54

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 49 4

  3. MAxO MAxO Public

    Medical action ontology

    HTML 52 4

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 15 2

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Python 19 6

Repositories

Showing 10 of 239 repositories
  • monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    monarch-initiative/monarch-ingest’s past year of commit activity
    Python 15 2 32 2 Updated Dec 13, 2024
  • ontogpt Public

    LLM-based ontological extraction tools, including SPIRES

    monarch-initiative/ontogpt’s past year of commit activity
    Jupyter Notebook 623 BSD-3-Clause 81 61 9 Updated Dec 12, 2024
  • monarch-initiative/vertebrate-breed-ontology’s past year of commit activity
    Makefile 11 1 55 5 Updated Dec 12, 2024
  • phenotype2phenopacket Public

    Phenotype2Phenopacket is a command-line tool that converts a phenotype annotation into GA4GH Phenopackets, facilitating standardised phenotypic data representation.

    monarch-initiative/phenotype2phenopacket’s past year of commit activity
    Python 2 1 0 0 Updated Dec 12, 2024
  • koza Public

    Data transformation framework for LinkML data models

    monarch-initiative/koza’s past year of commit activity
    Python 49 BSD-3-Clause 4 37 (1 issue needs help) 3 Updated Dec 12, 2024
  • monarch-initiative/clingen-ingest’s past year of commit activity
    Python 3 BSD-3-Clause 0 0 0 Updated Dec 12, 2024
  • gpsea Public

    A Python library for discovery of genotype-phenotype associations

    monarch-initiative/gpsea’s past year of commit activity
    Python 5 MIT 1 18 0 Updated Dec 12, 2024
  • phenopacket-store Public

    Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.

    monarch-initiative/phenopacket-store’s past year of commit activity
    Jupyter Notebook 16 BSD-3-Clause 4 15 0 Updated Dec 12, 2024
  • monarch-initiative/zfin-orthology-ingest’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Dec 12, 2024
  • omim Public

    Data ingest pipeline for OMIM.

    monarch-initiative/omim’s past year of commit activity
    Jupyter Notebook 7 3 63 3 Updated Dec 12, 2024

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