/
kidney.yaml
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/
kidney.yaml
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id: https://w3id.org/ontogpt/biological_process
name: kidney-template
title: kidney-template
description: >-
A template for extracting kidney info from literature
license: https://creativecommons.org/publicdomain/zero/1.0/
prefixes:
linkml: https://w3id.org/linkml/
kidney: http://w3id.org/ontogpt/kidney-template
default_prefix: kidney
default_range: string
imports:
- linkml:types
- core
classes:
KidneyAnnotations:
tree_root: true
attributes:
cell_type:
range: CellType
multivalued: true
gene:
description: >-
A gene
range: Gene
multivalued: true
CellType:
is_a: NamedEntity
id_prefixes:
- CL
- UBERON
annotations:
annotators: sqlite:obo:cl, sqlite:obo:uberon
prompt.examples: |
tubule epithelial cell, macula densa cell, glomerular endothelial cell,
podocyte, mesangial cell, parietal epithelial cell
description: >-
A cell type, for example a tubule epithelial cell, macula densa cell, glomerular
endothelial cell, podocyte, mesangial cell and parietal epithelial cell
Gene:
is_a: NamedEntity
id_prefixes:
- HGNC
annotations:
annotators: sqlite:obo:hgnc