Tweaking modules

monteirotorres · May 11, 2018 · a62ee30 · a62ee30
1 parent 7499a88
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Showing 7 changed files with 19 additions and 15 deletions.
diff --git a/README.rst b/README.rst
@@ -1,5 +1,5 @@
 Structuralia
-============
+############
 
 This suite of python scripts was built to access the PDB database and both prepare inputs and read generated output files.
 
@@ -10,24 +10,26 @@ Simply run Access.py to perform some of these functions intuitively.
 The Toolbox is packed up with functions that can be imported and used in your own scripts.
 
 Prerequisites
--------------
+*************
 
 The following packages and external programs are used by Structuralia scripts and must be installed and in either the binaries path or python path.
 
-- Python packages
+Python packages
+===============
 
   - progressbar
   - pandas
   - biopython
   - biopandas
   - pathlib
 
-- External software
+External software
+=================
 
   - TM-align
 
-AUTHOR
-------
+Author
+******
 
 Pedro Torres, Ph.D
 
@@ -37,6 +39,8 @@ University of Cambridge
 Cambridge CB2 1GA
 
 License
--------
+*******
 
-This project is licensed under GNU license, provided along with the package - see `LICENSE <LICENSE>`
+This project is licensed under GNU license, provided along with the package - see `LICENSE`_.
+
+.. _LICENSE: LICENSE
diff --git a/Structuralia/AccessPDB.py b/Structuralia/AccessPDB.py
@@ -29,7 +29,7 @@
 ###############################################################################
 import os
 import textwrap as tw
-import Toolbox as strtools
+import Structuralia.Toolbox as strtools
 
 
 # Main Function

diff --git a/Structuralia/OligoState.py b/Structuralia/OligoState.py
@@ -36,7 +36,7 @@
 '''
 # Imports
 ###############################################################################
-import Toolbox as strtools
+import Structuralia.Toolbox as strtools
 
 # Dictionaries
 ###############################################################################

diff --git a/Structuralia/OligoSum.py b/Structuralia/OligoSum.py
@@ -48,7 +48,7 @@
 import pandas as pd
 from progressbar import progressbar as pg
 from pathlib import Path
-import Toolbox as strtools
+import Structuralia.Toolbox as strtools
 
 # Dictionaries
 ###############################################################################

diff --git a/Structuralia/Toolbox.py b/Structuralia/Toolbox.py
@@ -52,7 +52,7 @@
 import Bio.PDB.Polypeptide as bpp_poly
 from biopandas.pdb import PandasPdb
 from progressbar import progressbar as pg
-from TimeWrap import timed
+from Structuralia.TimeWrap import timed
 
 # Classes
 ###############################################################################

diff --git a/setup.cfg b/setup.cfg
@@ -1,2 +1,2 @@
 [metadata]
-description-file = README.md
+description-file = README.rst
diff --git a/setup.py b/setup.py
@@ -12,13 +12,13 @@
 setup(
   name = 'Structuralia',
   packages = find_packages(),
-  version = '0.901',
+  version = '0.902',
   description = 'A toolset to work with proteins',
   long_description = long_description,
   author = 'Pedro Torres',
   author_email = 'monteirotorres@gmail.com',
   url = 'https://github.com/monteirotorres/Structuralia',
-  download_url = 'https://github.com/monteirotorres/Structuralia/archive/0.901.tar.gz',
+  download_url = 'https://github.com/monteirotorres/Structuralia/archive/0.902.tar.gz',
   keywords = ['PDB', 'structure', 'protein'],
   classifiers = [],
   py_modules=[