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added bash scripts
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Morgan MacLeod authored and Morgan MacLeod committed Dec 1, 2021
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8 changes: 7 additions & 1 deletion planet-wind-rt/README
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Utilities and software to compute transit spectra from Athena++ simulations of evaporative flows from planets.

Example usage:
python /Users/morganmacleod/Dropbox/PlanetWind/Analysis/planet-wind-rt/Planet_Wind_Ray_Star_Origin23.py --base_dir ./ --level 3 --N_mc 3000 --N_raypoints 200 --angles 0.06 --snapshot PW_W107.out1.00030.athdf --scale 0.25
python /Users/morganmacleod/Dropbox/PlanetWind/Analysis/planet-wind-rt/Planet_Wind_Ray_Star_Origin23.py --base_dir ./ --level 3 --N_mc 3000 --N_raypoints 200 --angles 0.06 --snapshot PW_W107.out1.00030.athdf --scale 0.25

v24 (as in revised paper):
python /Users/morganmacleod/Dropbox/PlanetWind/Analysis/planet-wind-rt/Planet_Wind_Ray_Star_Origin24.py --base_dir ./ --level 3 --N_radial 100 --f_raystep 0.05 --angles 0.06 --snapshot PW_W107.out1.00030.athdf --scale 0.2


Other example scripts are in the example folders, these are the scripts used to produce the data represented in the publication.
11 changes: 11 additions & 0 deletions planet-wind-rt/example/compute_angle_spec_new.sh
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SPEC="python /Users/morganmacleod/Dropbox/PlanetWind/Analysis/planet-wind-rt/Planet_Wind_Ray_Star_Origin24.py --base_dir ./ --level 4 --N_radial 100 --f_raystep 0.05 --angles -0.3 -0.29 -0.28 -0.27 -0.26 -0.25 -0.24 -0.23 -0.22 -0.21 -0.2 -0.19 -0.18 -0.17 -0.16 -0.15 -0.14 -0.13 -0.12 -0.11 -0.1 -0.09 -0.08 -0.07 -0.06 -0.05 -0.04 -0.03 -0.02 -0.01 0 0.01 0.02 0.03 0.04 0.05 0.06 0.07 0.08 0.09 0.1 0.11 0.12 0.13 0.14 0.15 0.16 0.17 0.18 0.19 0.2 0.21 0.22 0.23 0.24 0.25 0.26 0.27 0.28 0.29 0.3 --snapshot PW_W107.out1.00030.athdf --scale 0.2 --savedata"
SPECp="python /Users/morganmacleod/Dropbox/PlanetWind/Analysis/planet-wind-rt/Planet_Wind_Ray_Star_Origin24.py --base_dir ./ --level 4 --N_radial 100 --f_raystep 0.05 --angles -0.3 -0.29 -0.28 -0.27 -0.26 -0.25 -0.24 -0.23 -0.22 -0.21 -0.2 -0.19 -0.18 -0.17 -0.16 -0.15 -0.14 -0.13 -0.12 -0.11 -0.1 -0.09 -0.08 -0.07 -0.06 -0.05 -0.04 -0.03 -0.02 -0.01 0 0.01 0.02 0.03 0.04 0.05 0.06 0.07 0.08 0.09 0.1 0.11 0.12 0.13 0.14 0.15 0.16 0.17 0.18 0.19 0.2 0.21 0.22 0.23 0.24 0.25 0.26 0.27 0.28 0.29 0.3 --snapshot PW_W107.out1.00030.athdf --scale 0.2 --savedata --parker --mdot 9103870660.468765"

cd A; $SPECp; $SPEC
#cd A; $SPEC
cd ../B; $SPEC
cd ../C; $SPEC

#cd A; $SPECa; $SPECb; $SPECc; $SPECd; $SPECe
#cd ../B; $SPECa; $SPECb; $SPECc; $SPECd; $SPECe
#cd C; $SPECa; $SPECb; $SPECc; $SPECd; $SPECe
30 changes: 30 additions & 0 deletions planet-wind-rt/example/compute_convergence_spec_new.sh
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cd A
# number of rays
python /Users/morganmacleod/Dropbox/PlanetWind/Analysis/planet-wind-rt/Planet_Wind_Ray_Star_Origin24.py --base_dir ./ --level 5 --N_radial 12 --f_raystep 0.1 --angles 0.06 --snapshot PW_W107.out1.00030.athdf --scale 0.2
python /Users/morganmacleod/Dropbox/PlanetWind/Analysis/planet-wind-rt/Planet_Wind_Ray_Star_Origin24.py --base_dir ./ --level 5 --N_radial 25 --f_raystep 0.1 --angles 0.06 --snapshot PW_W107.out1.00030.athdf --scale 0.2
python /Users/morganmacleod/Dropbox/PlanetWind/Analysis/planet-wind-rt/Planet_Wind_Ray_Star_Origin24.py --base_dir ./ --level 5 --N_radial 50 --f_raystep 0.1 --angles 0.06 --snapshot PW_W107.out1.00030.athdf --scale 0.2
python /Users/morganmacleod/Dropbox/PlanetWind/Analysis/planet-wind-rt/Planet_Wind_Ray_Star_Origin24.py --base_dir ./ --level 5 --N_radial 100 --f_raystep 0.1 --angles 0.06 --snapshot PW_W107.out1.00030.athdf --scale 0.2
python /Users/morganmacleod/Dropbox/PlanetWind/Analysis/planet-wind-rt/Planet_Wind_Ray_Star_Origin24.py --base_dir ./ --level 5 --N_radial 200 --f_raystep 0.1 --angles 0.06 --snapshot PW_W107.out1.00030.athdf --scale 0.2

# level
python /Users/morganmacleod/Dropbox/PlanetWind/Analysis/planet-wind-rt/Planet_Wind_Ray_Star_Origin24.py --base_dir ./ --level 3 --N_radial 100 --f_raystep 0.05 --angles 0.06 --snapshot PW_W107.out1.00030.athdf --scale 0.2
python /Users/morganmacleod/Dropbox/PlanetWind/Analysis/planet-wind-rt/Planet_Wind_Ray_Star_Origin24.py --base_dir ./ --level 4 --N_radial 100 --f_raystep 0.05 --angles 0.06 --snapshot PW_W107.out1.00030.athdf --scale 0.2
python /Users/morganmacleod/Dropbox/PlanetWind/Analysis/planet-wind-rt/Planet_Wind_Ray_Star_Origin24.py --base_dir ./ --level 5 --N_radial 100 --f_raystep 0.05 --angles 0.06 --snapshot PW_W107.out1.00030.athdf --scale 0.2


# raypoints
python /Users/morganmacleod/Dropbox/PlanetWind/Analysis/planet-wind-rt/Planet_Wind_Ray_Star_Origin24.py --base_dir ./ --level 5 --N_radial 100 --f_raystep 0.1 --angles 0.06 --snapshot PW_W107.out1.00030.athdf --scale 0.2
python /Users/morganmacleod/Dropbox/PlanetWind/Analysis/planet-wind-rt/Planet_Wind_Ray_Star_Origin24.py --base_dir ./ --level 5 --N_radial 100 --f_raystep 0.2 --angles 0.06 --snapshot PW_W107.out1.00030.athdf --scale 0.2
python /Users/morganmacleod/Dropbox/PlanetWind/Analysis/planet-wind-rt/Planet_Wind_Ray_Star_Origin24.py --base_dir ./ --level 5 --N_radial 100 --f_raystep 0.4 --angles 0.06 --snapshot PW_W107.out1.00030.athdf --scale 0.2
python /Users/morganmacleod/Dropbox/PlanetWind/Analysis/planet-wind-rt/Planet_Wind_Ray_Star_Origin24.py --base_dir ./ --level 5 --N_radial 100 --f_raystep 0.8 --angles 0.06 --snapshot PW_W107.out1.00030.athdf --scale 0.2

# resolution
cd A3
python /Users/morganmacleod/Dropbox/PlanetWind/Analysis/planet-wind-rt/Planet_Wind_Ray_Star_Origin24.py --base_dir ./ --level 3 --N_radial 100 --f_raystep 0.05 --angles 0.06 --snapshot PW_W107.out1.00030.athdf --scale 0.2
cd ../A4
python /Users/morganmacleod/Dropbox/PlanetWind/Analysis/planet-wind-rt/Planet_Wind_Ray_Star_Origin24.py --base_dir ./ --level 3 --N_radial 100 --f_raystep 0.05 --angles 0.06 --snapshot PW_W107.out1.00030.athdf --scale 0.2
python /Users/morganmacleod/Dropbox/PlanetWind/Analysis/planet-wind-rt/Planet_Wind_Ray_Star_Origin24.py --base_dir ./ --level 4 --N_radial 100 --f_raystep 0.05 --angles 0.06 --snapshot PW_W107.out1.00030.athdf --scale 0.2
cd ../A6
python /Users/morganmacleod/Dropbox/PlanetWind/Analysis/planet-wind-rt/Planet_Wind_Ray_Star_Origin24.py --base_dir ./ --level 3 --N_radial 100 --f_raystep 0.05 --angles 0.06 --snapshot PW_W107.out1.00030.athdf --scale 0.2
python /Users/morganmacleod/Dropbox/PlanetWind/Analysis/planet-wind-rt/Planet_Wind_Ray_Star_Origin24.py --base_dir ./ --level 4 --N_radial 100 --f_raystep 0.05 --angles 0.06 --snapshot PW_W107.out1.00030.athdf --scale 0.2
python /Users/morganmacleod/Dropbox/PlanetWind/Analysis/planet-wind-rt/Planet_Wind_Ray_Star_Origin24.py --base_dir ./ --level 5 --N_radial 100 --f_raystep 0.05 --angles 0.06 --snapshot PW_W107.out1.00030.athdf --scale 0.2

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