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IQ-TREE randomly resolved multifurcation is not appropriate for DTL reconciliation #5
Labels
enhancement
New feature or request
IQ-TREE randomly resolves the multifurcation of the bootstrap tree (branch length = 0.0000000000).
However, it is assumed that the randomly resolved topology leads to undesirable results such as a significant increase in DTL cost.
Therefore, it may be effective to resolve multifurcation based on the topology of species tree to reduce the DTL cost generation instead of resolving random topology.
When multifurcation is detected in the bootstrap tree, I'd like to consider implementing a method to resolve it based on the topology of species tree.
Multifurcation gene tree sample
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