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Multi-contig gff parsing: Range issue #33
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Hi @acarafat, Thank you for reporting this issue. Looking back at the code of the Gff parser, as you said, if there is no There was a bug in the code that assumed the absence of the |
I've released v0.5.1, so give it a try and see if it works for you. |
Thank you so much! |
Hello, I'm just realized that the .gbk parser also has the same issue. Best, |
There is no |
Discussed in #32
Originally posted by acarafat August 22, 2023
I am working with a GFF file that contains multiple contigs, but the
##sequence-region
only shows for the contig 1 in the gff header info.Currently, while using
.get_seqid2size()
from gff parser, present code relies on##sequence-region
tag, therefore it gets the range for rest of the contigs wrong.It could be solved by not relying on the
##sequence-region
, since many gff file generated by different programs may not contain this comment.The text was updated successfully, but these errors were encountered: