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@@ -94,7 +94,7 @@ For a full description of HybPiper output, [see the wiki](https://github.com/mos
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# Changelog
**1.2***March, 2017*
**1.2***May, 2017*
* Features
Expand All
@@ -103,6 +103,7 @@ For a full description of HybPiper output, [see the wiki](https://github.com/mos
- Added `--target` flag. Adds the ability to choose which of the reference sequences is used for each gene. If `--target` is a file (tab-delimited file with one gene and one target name per line), HybPiper will use that. Otherwise `--target` can be the name of one reference. HybPiper will only use targets with the specified name in the Alignment/Exon Extraction phase. All other targets for that locus will only be used in the Mapping/Read Sorting phase.
- Added `--timeout` flag, which uses GNU Parallel to kill processes (i.e. Spades or Exonerate) if they take X percent longer than average. Use if there are a lot of stuck jobs (`--timeout 1000`)
