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| // | ||
| // testtrimoligos.cpp | ||
| // Mothur | ||
| // | ||
| // Created by Sarah Westcott on 7/14/16. | ||
| // Copyright © 2016 Schloss Lab. All rights reserved. | ||
| // | ||
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| #include "catch.hpp" | ||
| #include "testtrimoligos.hpp" | ||
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| /**************************************************************************************************/ | ||
| TestTrimOligos::TestTrimOligos() { //setup | ||
| m = MothurOut::getInstance(); | ||
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| //set up barcodes, primers, pairedBarcodes and pairedPrimers | ||
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| //Set up vector of seqs with barcodes and primers | ||
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| //Set up vector of seqs with pairedbarcodes and pairedprimers | ||
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| } | ||
| /**************************************************************************************************/ | ||
| TestTrimOligos::~TestTrimOligos() { | ||
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| } | ||
| /**************************************************************************************************/ | ||
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| TEST_CASE("Testing TrimOligos Class") { | ||
| TestTrimOligos testTrim; | ||
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| //Create trimoligos classes with various constructors | ||
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| //run all public strip functions | ||
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| //run private functions | ||
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| } | ||
| /**************************************************************************************************/ |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,38 @@ | ||
| // | ||
| // testtrimoligos.hpp | ||
| // Mothur | ||
| // | ||
| // Created by Sarah Westcott on 7/14/16. | ||
| // Copyright © 2016 Schloss Lab. All rights reserved. | ||
| // | ||
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| #ifndef testtrimoligos_hpp | ||
| #define testtrimoligos_hpp | ||
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| #include "trimoligos.h" | ||
| #include "sequence.hpp" | ||
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| class TestTrimOligos : public TrimOligos { | ||
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| public: | ||
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| TestTrimOligos(); | ||
| ~TestTrimOligos(); | ||
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| MothurOut* m; | ||
| vector<Sequence> seqs; | ||
| vector<Sequence> pairedSeqs; | ||
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| map<string, int> barcodes; | ||
| map<string, int> primers; | ||
| map<int, oligosPair> pairedPrimers; | ||
| map<int, oligosPair> pairedBarcodes; | ||
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| using TrimOligos::compareDNASeq(string, string); | ||
| using TrimOligos::countDiffs(string, string); | ||
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| }; | ||
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| #endif /* testtrimoligos_hpp */ |
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