Adds ability to input multiple files

Will help with file mismatch issues #792 #803
mothur · Nov 30, 2021 · 919d88f · 919d88f
1 parent 9c9987e
commit 919d88f
Show file tree

Hide file tree

Showing 2 changed files with 231 additions and 251 deletions.
diff --git a/source/commands/getlineagecommand.cpp b/source/commands/getlineagecommand.cpp
@@ -91,7 +91,7 @@ string GetLineageCommand::getOutputPattern(string type) {
         else if (type == "count")           {   pattern = "[filename],pick,[extension]";    }
         else if (type == "list")            {   pattern = "[filename],[distance],pick,[extension]";    }
         else if (type == "shared")          {   pattern = "[filename],[distance],pick,[extension]";    }
-        else if (type == "alignreport")     {   pattern = "[filename],pick.align.report";    }
+        else if (type == "alignreport")     {   pattern = "[filename],pick.[extension]";    }
         else { m->mothurOut("[ERROR]: No definition for type " + type + " output pattern.\n"); m->setControl_pressed(true);  }
 
         return pattern;