Globalizes inputDir for vsearch methods

#169
mothur · Feb 29, 2016 · eafae91 · eafae91
1 parent 258d3c4
commit eafae91
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/source/commands/clustercommand.cpp b/source/commands/clustercommand.cpp
@@ -133,7 +133,7 @@ ClusterCommand::ClusterCommand(string option)  {
 			//if the user changes the output directory command factory will send this info to us in the output parameter 
 			outputDir = validParameter.validFile(parameters, "outputdir", false);		if (outputDir == "not found"){	outputDir = "";		}
 
-			string inputDir = validParameter.validFile(parameters, "inputdir", false);		
+			inputDir = validParameter.validFile(parameters, "inputdir", false);		
 			if (inputDir == "not found"){	inputDir = "";		}
 			else {
 				string path;

diff --git a/source/commands/clustercommand.h b/source/commands/clustercommand.h
@@ -54,7 +54,7 @@ class ClusterCommand : public Command {
 
 	bool abort, hard, sim;
 
-	string method, fileroot, tag, outputDir, phylipfile, columnfile, namefile, format, distfile, countfile, fastafile, vsearchLocation;
+	string method, fileroot, tag, outputDir, phylipfile, columnfile, namefile, format, distfile, countfile, fastafile, inputDir, vsearchLocation;
 	double cutoff;
     float adjust;
 	string showabund, timing;