Adds list to output types get.seqs internal

#792
mothur · Oct 5, 2021 · f597278 · f597278
1 parent 024400e
commit f597278
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/source/commands/getseqscommand.cpp b/source/commands/getseqscommand.cpp
@@ -120,6 +120,7 @@ GetSeqsCommand::GetSeqsCommand(set<string> n, string ffile, string lfile, string
         outputTypes["name"] = tempOutNames;
         outputTypes["count"] = tempOutNames;
         outputTypes["fasta"] = tempOutNames;
+        outputTypes["list"] = tempOutNames;
 
         if (dupsFile != "") {
             if (dupsFileType == "count") {

diff --git a/source/datastructures/alignmentdb.cpp b/source/datastructures/alignmentdb.cpp
@@ -28,8 +28,7 @@ AlignmentDB::AlignmentDB(string fastaFileName, string s, int kmerSize, float gap
         //bool aligned = false;
         int tempLength = 0;
 
-        ifstream fastaFile;
-        util.openInputFile(fastaFileName, fastaFile);
+        ifstream fastaFile; util.openInputFile(fastaFileName, fastaFile);
 
         while (!fastaFile.eof()) {
             Sequence temp(fastaFile);  util.gobble(fastaFile);