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Windows versions if files contain 1 sequence and multiple processors are used empty file error #195

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mothur-westcott opened this issue Jan 13, 2016 · 1 comment

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@mothur-westcott
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mothur > align.seqs(fasta=e.coli.16s.pcr.fasta, reference=silva.v123.align)

Using 4 processors.

Reading in the silva.v123.align template sequences... DONE.
It took 22 to read 14914 sequences.
Aligning sequences from e.coli.16s.pcr.fasta ...

Reading in the silva.v123.align template sequences... Error in reading your fastafile, at position -1. Blank name.
DONE.
It took 0 to read 0 sequences.

@mothur-westcott mothur-westcott added this to the Version 1.37.0 milestone Jan 13, 2016
mothur-westcott added a commit that referenced this issue Feb 29, 2016
If number of processors was greater than number of sequences than we meant to adjust processors to number of sequences, but instead were adjusting to the number of file positions.  The number of file positions is the number of sequences + 1.  Rare bug caused empty file error.

#195
@mothur-westcott
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Completed with 38a959d

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