Another logging tweak.

mozack · Jul 14, 2015 · 542ea3f · 542ea3f
1 parent 7c5ec7b
commit 542ea3f
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/src/main/java/abra/ReAligner.java b/src/main/java/abra/ReAligner.java
@@ -589,7 +589,9 @@ public void processRegion(Feature region) throws Exception {
 					List<BreakpointCandidate> svCandidates = assem.getSvCandidateRegions();
 					for (BreakpointCandidate svCandidate : svCandidates) {
 
-						System.out.println("SV: " + region.getDescriptor() + "-->" + svCandidate.getRegion().getDescriptor());
+						if (isDebug) {
+							System.out.println("SV: " + region.getDescriptor() + "-->" + svCandidate.getRegion().getDescriptor());
+						}
 						List<Feature> svRegions = new ArrayList<Feature>();
 						svRegions.add(region);
 						Feature svCandidateRegion = new Feature(svCandidate.getRegion().getSeqname(), svCandidate.getRegion().getStart(),