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two more weeks; fix URL to scidap workflow
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mr-c committed Nov 13, 2015
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2 changes: 1 addition & 1 deletion week-of-20151019-update.rst
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-----

- Get `Andrey Kartashov's recently contributed workflows
<https://github.com/common-workflow-language/schema_salad/issues/4>`_
<https://github.com/common-workflow-language/workflows/tree/master/workflows/scidap>`_
running for myself.
- Familiarize myself with vagrant to setup Jenkins CI server to test CWL
conformance
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.. post:: 2015-11-11
:tags: weekly-update
:author: me
:location: Cluj

****************************************
Weekly report for the week of 2015-10-26
****************************************

This is the second weekly update on what I've been doing for the CWL; it covers
the week of 2015-10-26.

Summary: logistics, Code of Conduct draft public,

Sunday 2015-10-25
-----------------

- Reserved rental car for Davis/San Mateo/Santa Clara legs
- Requested hotel reservation information for Austin leg
- Booked AirBNB room for Boston leg
- Schedule first check-in meeting with Brandi
- Confirmed dates for a colleague of a colleague to stay in my Davis apartment

Monday 2015-10-26
-----------------

- Read through every GitHub issue from non-core team people, adding responses
and labels as I went
- Finished my NSF funding opportunities education for now; subscribed to learn
about future opportunities
- Sent out reminder about CWL video meeting & daylight savings mismatch between
Europe and US
- Fixed typo in GitHub repository as reported by Chris Fields
- Wrote up notes from last week and sent them out

Tuesday 2015-10-27
------------------

- Reviewed Code of Conduct options again, made pull request to take the
conversation public as requested by the leadership team
- Reviewed and merged
https://github.com/common-workflow-language/common-workflow-language/pull/152
- Ran regular CWL group video chat, our largest yet with 17 participants!
- Next meeting will be on November 10th.
- Sent out location & remote participation guidance
- Took notes at the meeting: https://docs.google.com/document/d/1wZN0m2Vu4Cpqhd50HgcxJG_fxI4034qBWTZxRn1kbCw/edit?usp=sharing

Wednesday 2015-10-28
--------------------

- Bi-weekly meeting with Brand Davis-Dusenbery

- Lawyers advised that non-profits seeking 501(3)c status involving
free/open-source software and whose donors are on the board have had many
troubles getting approved due to lack of separation. I agreed to chat with
both NumFOCUS & the Software Freedom Conservatory about fiscal sponsorship.
- Brandi agreed to be the escalation contact for potential (though not
expected) CoC violations by Nebojša.
- Scheduled meeting at SBG prior to conversation at the Broad about their
Workflow Description Language on Nov 13th.
- I enquired about recording/broadcasting the Festival of Genomics workshop;
Brandi will followup.

- Made a logo: http://logomakr.com/2xjnRU implemented a favicon using
http://www.favicomatic.com/done
- Setup Hangouts on Air streaming which required creating a YouTube channel, G+
page, and several verifications.

Thursday 2015-10-29
-------------------

- Travel day: CLJ-OTP-AMS-MSP-SMF
- Voiced my support for keeping a '--dry-run' option to cwltool

Friday 2015-10-30
-----------------

- Attended an excellent workshop, "Software for Science: Getting Credit for Code"
#SoftCiteUCD http://icis.ucdavis.edu/?p=790
- Had great conversations with Louise Kellogg of the Computational Infrastructure
for Geosciences group. https://geodynamics.org/cig/about/

Saturday 2015-11-01
-------------------

- Whoops, sublet for my apartment fell through. Gave away most everything I
could and moved my things to storage.
70 changes: 70 additions & 0 deletions week-of-20151105-update.rst
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.. post:: 2015-11-11
:tags: weekly-update
:author: me
:location: Cluj

****************************************
Weekly report for the week of 2015-11-05
****************************************

This is the third weekly update on what I've been doing for the CWL; it covers
the week of 2015-11-05.

Summary: FoG Workshop & Dev summit were a huge success!

Monday 2015-11-05
-----------------

- Dealt with fallout from my sublet falling through
- Drove to San Mateo

Tuesday 2015-11-06
------------------

- CWL Workshop at the Festival of Genomics, California
- Well over 50 participants!
- Had many great conversations including one with Matt Bookman of the Google
Cloud team. He is working with ISB on their CWL-on-Kubernetes development.
- Sketched out how to use the "streamable" flag to optimize use of object
stores such as Google Cloud Storage. Discussed using the GCS FUSE adapter
instead of using GCS URIs in CWL documents. A complete win for that design
decision.

Wednesday 2015-11-07
--------------------

- CWL Codefest
- Was really more of a core team summit
- Lots of useful discussion on draft 3 features. Notes are at:
https://drive.google.com/open?id=1AXMDv7Zy7D68XbbGjv4pIKw69H31_gfYn5Hk6RGl--M
- Undecided issues: specifiying how to satisfy tool dependencies without using
Docker
- Drove back to Davis

Thursday 2015-11-08
-------------------

- Finished moving out of my apartment. Missed my flight to Austin by mere
minutes.
- Read ansible documentation

Friday 2015-11-09
-----------------

- Got up at 03:30 for my rescheduled flight to Austin; second leg was canceled,
"bonus" 10-hour layover
- talk prep for TACC

To do
-----

- Get `Andrey Kartashov's recently contributed workflows
<https://github.com/common-workflow-language/workflows/tree/master/workflows/scidap>`_
running for myself.
- Setup Jenkins CI server to test CWL conformance
- Start the sustainability review.
- Start an ontological comparison between the semantics of CWL tool and
workflow descriptions and `the other known efforts
<https://github.com/common-workflow-language/common-workflow-language/wiki/Existing-Workflow-systems>`_.
- Follow up with the Software Freedom Conservancy and NumFOCUS.

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