--- re-building ‘epireview_overview.Rmd’ using rmarkdown

processing vignette 'pathogen_marburg.Rmd' failed with diagnostics:

Vignette re-building failed.

Build process failed

Process completed with exit code 1.

--- re-building ‘epireview_overview.Rmd’ using rmarkdown

processing vignette 'pathogen_marburg.Rmd' failed with diagnostics:

Vignette re-building failed.

Build process failed

Process completed with exit code 1.

--- re-building 'epireview_overview.Rmd' using rmarkdown

processing vignette 'pathogen_marburg.Rmd' failed with diagnostics:

Vignette re-building failed.

Build process failed

Process completed with exit code 1.

--- re-building ‘epireview_overview.Rmd’ using rmarkdown

processing vignette 'pathogen_marburg.Rmd' failed with diagnostics:

Vignette re-building failed.

Build process failed

Process completed with exit code 1.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

No files were found with the provided path: check. No artifacts will be uploaded.

The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "pathogen_database_fields", and the latter is "Database field options". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.

The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "pathogen_database_update", and the latter is "How to update the database with new article data". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "pathogen_database_fields", and the latter is "Database field options". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.

The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "pathogen_database_update", and the latter is "How to update the database with new article data". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.

No files were found with the provided path: check. No artifacts will be uploaded.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "pathogen_database_fields", and the latter is "Database field options". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.

The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "pathogen_database_update", and the latter is "How to update the database with new article data". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.

No files were found with the provided path: check. No artifacts will be uploaded.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

No files were found with the provided path: check. No artifacts will be uploaded.

The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "pathogen_database_fields", and the latter is "Database field options". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.