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Add an orderly command line tool. #53

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Add an orderly command line tool. #53

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Commits on Jun 12, 2024

  1. Add an orderly command line tool. 

    A lot of the operational APIs in the package were exposed only as
functions, following the R practice. It is more common in Python to
expose these as a command like tool.

This adds basic commands to create a repository, run a report, search
packets and manage locations. More features and bells and whistles can
be added later on.

The tool is currently named `orderly`, following the package's name.
This may change in the future, if and when we decide to rename the
package.
    @plietar
    plietar committed Jun 12, 2024
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  2. Update src/orderly/cli/options.py 

    Co-authored-by: Rich FitzJohn <r.fitzjohn@imperial.ac.uk>
    @plietar @richfitz
    plietar and richfitz committed Jun 12, 2024
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  3. Code review.

    @plietar
    plietar committed Jun 12, 2024
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