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specio

Project Status: WIP - Initial development is in progress, but there has not yet been a stable, usable release suitable for the public. Travis-CI Build Status codecov.io

specio handles reading and parsing data from Spectrum PJNZ file into an R consumable format for use in the Estimation and Projection Package (EPP) for estimating and projecting HIV prevalence.

Usage

As well as the functions required for EPP specio also provides 2 more general functions for extracting population data and PLHIV data from the PJNZ file. These are extract_population and extract_hiv_population. See website reference for usage and examples.

Installation

To install internally released version via drat:

# install.packages("drat") # (if needed)
drat:::add("mrc-ide")
install.packages("specio")

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🌈 Spectrum IO for EPP model for HIV epidemic estimates

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