https://github.com/PacificBiosciences/IsoSeq
The workflow currently requires as input the flnc.bam file from the postprocessing stage of IsoSeq sequencing, and a genome assembly.
First, clone this repository: git clone https://github.com/mrmrwinter/isoseq_processing.git
Next, navigate to the isoseq_processing directory and set up the paths in the config.yaml file.