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1.0.0

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@ms609 ms609 released this 09 Jan 15:34
· 353 commits to master since this release

New features

  • Add functions to generate ternary plots from tree similarity measures.

Improvements

  • Use tqDist for all quartet calculations.
  • Remove single "splits" from splits objects.
  • Simplify installation via github_install.
  • Add missing details to documentation.

Modifications

  • Function SimilarityMetrics now takes the output of QuartetStatus(trees),
    rather than a list of trees.
  • Function SplitStatus now returns output using the same column headers as QuartetStatus
  • Column N added to QuartetStatus output.
  • Function names changed, to become more precise:
    • QuartetMetricsSimilarityMetrics
    • MatchingSplitsSplitStatus
    • MatchingQuartetsQuartetStatus
    • ChoicesAllQuartets