0.1.3

[ms609]

New features

• RootTree function allows rooting of tree on incompletely specified
  or single-taxon outgroup
• AllTBR returns all trees one TBR rearrangement away
• TBRMoves reports all possible TBR rearrangements (see Generate all rearranged trees #4 )
• Jackknife conducts Jackknife resampling
• SplitFrequency reports frequency of clades in a forest
• SupportColour allows visual marking of support values
• ApeTime reports the creation date of an ape-exported tree
• SortTree flips nodes into a consistent left-right order
• AsBinary supports 0

Enhancements

• [IW]RatchetConsensus renamed to [IW]MultiRatchet, giving a better description
  of the function's purpose
• Don't warn about missing EOL when reading Nexus or TNT files
• Add new 12-colour colourblind-friendly palette
• FitchSteps now supports datasets with tips not found in tree
• Improve portability of function ReadTntTree

Bug fixes

• [IW]MultiRatchet now considers trees identical even if they've been hit
  a different number of times

[codecov]

Codecov Report

Merging #39 into master will decrease coverage by 0.07%.
The diff coverage is 66.66%.

@@            Coverage Diff             @@
##           master      #39      +/-   ##
==========================================
- Coverage    57.8%   57.73%   -0.08%     
==========================================
  Files          39       39              
  Lines        4399     4398       -1     
==========================================
- Hits         2543     2539       -4     
- Misses       1856     1859       +3

Impacted Files	Coverage Δ
R/Ratchet.R	64.17% <0%> (-0.53%)	⬇️
R/tree_display.R	5.88% <0%> (-0.18%)	⬇️
R/ape_interface.R	87.5% <0%> (-5.84%)	⬇️
R/Support.R	95.65% <100%> (ø)	⬆️
R/mpl_prepare_data.R	81.81% <87.5%> (-2.63%)	⬇️

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