MiDAS4

R-scripts used in "MiDAS 4: A global catalogue of full-length 16S rRNA gene sequences and taxonomy for studies of bacterial communities in wastewater treatment plants"

Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
Figure1_World_map_and_metadata.Rmd		Figure1_World_map_and_metadata.Rmd
Figure2_Phylogenetic_tree_metadata.Rmd		Figure2_Phylogenetic_tree_metadata.Rmd
Figure3_MiDAS4_FLASV_validation_GWMC.Rmd		Figure3_MiDAS4_FLASV_validation_GWMC.Rmd
Figure4_V13_vs_V4.Rmd		Figure4_V13_vs_V4.Rmd
Figure5_S5_V13_Beta-diversity.Rmd		Figure5_S5_V13_Beta-diversity.Rmd
Figure6a_6b_S7_Core_analysis.Rmd		Figure6a_6b_S7_Core_analysis.Rmd
Figure6c_6d_Core_analysis.Rmd		Figure6c_6d_Core_analysis.Rmd
Figure7_Heatmap_core_taxa.Rmd		Figure7_Heatmap_core_taxa.Rmd
Figure8-9_S8-14_Functional_guilds_heatmaps.Rmd		Figure8-9_S8-14_Functional_guilds_heatmaps.Rmd
FigureS1_Taxonomy_novelty_graphs.Rmd		FigureS1_Taxonomy_novelty_graphs.Rmd
FigureS2_FLASV_validation_V13.Rmd		FigureS2_FLASV_validation_V13.Rmd
FigureS2_FLASV_validation_V4.Rmd		FigureS2_FLASV_validation_V4.Rmd
FigureS3_Alpha_diversity.Rmd		FigureS3_Alpha_diversity.Rmd
FigureS4_Distance_decay_rates.Rmd		FigureS4_Distance_decay_rates.Rmd
FigureS6_V4_Beta-diversity.Rmd		FigureS6_V4_Beta-diversity.Rmd
FigureSI1_Error_rate_evaluation.Rmd		FigureSI1_Error_rate_evaluation.Rmd
README.md		README.md
Table1_Sequence_novelty.Rmd		Table1_Sequence_novelty.Rmd
Table1_taxonomy_novelty.Rmd		Table1_taxonomy_novelty.Rmd

msdueholm/MiDAS4

Folders and files

Latest commit

History

Repository files navigation

MiDAS4

About

Resources

Stars

Watchers

Forks