added apache headers, added datainputstream directly as an output opt…

…ion for more complicated readers (HDF5 perhaps), and renamed several of the functions and files to be more consistent. Also added parallel functions to the java api

core/src/main/scala/org/apache/spark/SparkContext.scala

@@ -40,7 +40,7 @@ import org.apache.mesos.MesosNativeLibrary
 import org.apache.spark.annotation.{DeveloperApi, Experimental}
 import org.apache.spark.broadcast.Broadcast
 import org.apache.spark.deploy.{LocalSparkCluster, SparkHadoopUtil}
-import org.apache.spark.input.{WholeTextFileInputFormat,ByteInputFormat}
+import org.apache.spark.input.{StreamInputFormat, StreamFileInputFormat, WholeTextFileInputFormat, ByteInputFormat}
 import org.apache.spark.partial.{ApproximateEvaluator, PartialResult}
 import org.apache.spark.rdd._
 import org.apache.spark.scheduler._
@@ -517,11 +517,11 @@ class SparkContext(config: SparkConf) extends Logging {
    *
    * @note Small files are preferred, large file is also allowable, but may cause bad performance.
    */
-  def byteFiles(path: String, minPartitions: Int = defaultMinPartitions): RDD[(String, Array[Byte])] = {
+  def binaryFiles(path: String, minPartitions: Int = defaultMinPartitions): RDD[(String, Array[Byte])] = {
     val job = new NewHadoopJob(hadoopConfiguration)
     NewFileInputFormat.addInputPath(job, new Path(path))
     val updateConf = job.getConfiguration
-    new BinaryFileRDD(
+    new RawFileRDD(
       this,
       classOf[ByteInputFormat],
       classOf[String],
@@ -530,6 +530,28 @@ class SparkContext(config: SparkConf) extends Logging {
       minPartitions).setName(path)
   }
 
+  /**
+   * Get an RDD for a Hadoop-readable dataset as DataInputStreams for each file (useful for binary data)
+   * Care must be taken to close the files afterwards
+   *
+   * @param minPartitions A suggestion value of the minimal splitting number for input data.
+   *
+   * @note Small files are preferred, large file is also allowable, but may cause bad performance.
+   */
+  @DeveloperApi
+  def dataStreamFiles(path: String, minPartitions: Int = defaultMinPartitions): RDD[(String, DataInputStream)] = {
+    val job = new NewHadoopJob(hadoopConfiguration)
+    NewFileInputFormat.addInputPath(job, new Path(path))
+    val updateConf = job.getConfiguration
+    new RawFileRDD(
+      this,
+      classOf[StreamInputFormat],
+      classOf[String],
+      classOf[DataInputStream],
+      updateConf,
+      minPartitions).setName(path)
+  }
+
   /**
    * Get an RDD for a Hadoop-readable dataset from a Hadoop JobConf given its InputFormat and other
    * necessary info (e.g. file name for a filesystem-based dataset, table name for HyperTable),

core/src/main/scala/org/apache/spark/api/java/JavaSparkContext.scala

@@ -20,6 +20,8 @@ package org.apache.spark.api.java
 import java.util
 import java.util.{Map => JMap}
 
+import java.io.DataInputStream
+
 import scala.collection.JavaConversions
 import scala.collection.JavaConversions._
 import scala.language.implicitConversions
@@ -180,6 +182,8 @@ class JavaSparkContext(val sc: SparkContext) extends JavaSparkContextVarargsWork
   def textFile(path: String, minPartitions: Int): JavaRDD[String] =
     sc.textFile(path, minPartitions)
 
+
+
   /**
    * Read a directory of text files from HDFS, a local file system (available on all nodes), or any
    * Hadoop-supported file system URI. Each file is read as a single record and returned in a
@@ -210,6 +214,66 @@ class JavaSparkContext(val sc: SparkContext) extends JavaSparkContextVarargsWork
   def wholeTextFiles(path: String, minPartitions: Int): JavaPairRDD[String, String] =
     new JavaPairRDD(sc.wholeTextFiles(path, minPartitions))
 
+  /**
+   * Read a directory of binary files from HDFS, a local file system (available on all nodes), or any
+   * Hadoop-supported file system URI as a byte array. Each file is read as a single record and returned in a
+   * key-value pair, where the key is the path of each file, the value is the content of each file.
+   *
+   * <p> For example, if you have the following files:
+   * {{{
+   *   hdfs://a-hdfs-path/part-00000
+   *   hdfs://a-hdfs-path/part-00001
+   *   ...
+   *   hdfs://a-hdfs-path/part-nnnnn
+   * }}}
+   *
+   * Do `JavaPairRDD<String, byte[]> rdd = sparkContext.dataStreamFiles("hdfs://a-hdfs-path")`,
+   *
+   * <p> then `rdd` contains
+   * {{{
+   *   (a-hdfs-path/part-00000, its content)
+   *   (a-hdfs-path/part-00001, its content)
+   *   ...
+   *   (a-hdfs-path/part-nnnnn, its content)
+   * }}}
+   *
+   * @note Small files are preferred, large file is also allowable, but may cause bad performance.
+   *
+   * @param minPartitions A suggestion value of the minimal splitting number for input data.
+   */
+  def dataStreamFiles(path: String, minPartitions: Int = defaultMinPartitions): JavaPairRDD[String,DataInputStream] =
+    new JavaPairRDD(sc.dataStreamFiles(path,minPartitions))
+
+  /**
+   * Read a directory of files as DataInputStreams from HDFS, a local file system (available on all nodes), or any
+   * Hadoop-supported file system URI as a byte array. Each file is read as a single record and returned in a
+   * key-value pair, where the key is the path of each file, the value is the content of each file.
+   *
+   * <p> For example, if you have the following files:
+   * {{{
+   *   hdfs://a-hdfs-path/part-00000
+   *   hdfs://a-hdfs-path/part-00001
+   *   ...
+   *   hdfs://a-hdfs-path/part-nnnnn
+   * }}}
+   *
+   * Do `JavaPairRDD<String, DataInputStream> rdd = sparkContext.binaryFiles("hdfs://a-hdfs-path")`,
+   *
+   * <p> then `rdd` contains
+   * {{{
+   *   (a-hdfs-path/part-00000, its content)
+   *   (a-hdfs-path/part-00001, its content)
+   *   ...
+   *   (a-hdfs-path/part-nnnnn, its content)
+   * }}}
+   *
+   * @note Small files are preferred, large file is also allowable, but may cause bad performance.
+   *
+   * @param minPartitions A suggestion value of the minimal splitting number for input data.
+   */
+  def binaryFiles(path: String, minPartitions: Int = defaultMinPartitions): JavaPairRDD[String,Array[Byte]] =
+    new JavaPairRDD(sc.binaryFiles(path,minPartitions))
+
   /**
    * Read a directory of text files from HDFS, a local file system (available on all nodes), or any
    * Hadoop-supported file system URI. Each file is read as a single record and returned in a