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22 Open 48 Closed
22 Open 48 Closed
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Issues list

Need to add id and label fields to all CWL's and tools
#114 opened Aug 25, 2022 by stevekm
Fix Jenkins recipe
#113 opened Aug 2, 2022 by stevekm
fix Pluto serializer script for pairs
#112 opened Aug 2, 2022 by stevekm
add TMB maf output
#111 opened Aug 2, 2022 by stevekm
add CMO PORTAL MUTS to data clinical sample
#110 opened Aug 2, 2022 by stevekm
add CMO ASSAY COVERAGE to data clinical sample
#109 opened Aug 2, 2022 by stevekm
add CMO ASSAY label to data clinical sample
#108 opened Aug 2, 2022 by stevekm
High temp storage usage with samples_fillout_index_batch_workflow.cwl bug Something isn't working high priority
#106 opened Jul 12, 2022 by stevekm
1
consolidate Python fixtures enhancement New feature or request low priority
#94 opened Jan 25, 2022 by stevekm
3
need to update samples fillout workflow output enhancement New feature or request high priority
#84 opened Jan 4, 2022 by stevekm
2 of 3 tasks
4
incorporate dos2unix into samples fillout workflow (resurrection workflow) bug Something isn't working low priority
#70 opened Sep 8, 2021 by stevekm
1
update workflow.cwl to include more recent pipeline outputs and refactors enhancement New feature or request
#69 opened Aug 11, 2021 by stevekm
portal/data_clinical_sample.txt file is missing pipeline version bug Something isn't working
#66 opened Jul 27, 2021 by timosong
3
Make data_mutations_uncalled and meta_mutations_uncalled files for cBioPortal enhancement New feature or request high priority
#63 opened Jun 22, 2021 by stevekm
2
add OncoKB annotation to maf output enhancement New feature or request high priority
#60 opened May 28, 2021 by stevekm
pipeline tools documentation for PI's low priority
#53 opened Mar 31, 2021 by stevekm
1
add sample concordance / discordance comparisons low priority
#52 opened Mar 31, 2021 by stevekm
Add sample vs. cohort plots to reporting enhancement New feature or request low priority
#47 opened Mar 16, 2021 by stevekm
use .bed file for IGV report sites low priority
#45 opened Mar 15, 2021 by stevekm
1
get IGV Reports into the workflow low priority
#43 opened Mar 11, 2021 by stevekm
get variant overlap metrics into the pipeline enhancement New feature or request
#41 opened Mar 4, 2021 by stevekm
2
Add concordance workflow & reporting enhancement New feature or request high priority
#32 opened Jan 14, 2021 by stevekm
1
ProTip! What’s not been updated in a month: updated:<2024-04-26.