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Add a test.vcf for a quicker start
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ckandoth committed Mar 7, 2014
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8 changes: 6 additions & 2 deletions README.md
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Expand Up @@ -8,8 +8,12 @@ Quick start

Download the script, and view the detailed usage manual:

curl -LO https://raw2.github.com/ckandoth/vcf2maf/master/vcf2maf.pl
perl vcf2maf.pl --man
curl -LO https://github.com/ckandoth/vcf2maf/archive/master.zip; unzip master.zip
perl vcf2maf-master/vcf2maf.pl --man

If you don't already have snpEff, see the next section. And then test the script:

perl vcf2maf-master/vcf2maf.pl --input-vcf vcf2maf-master/test.vcf --output-maf vcf2maf-master/test.maf

Install snpEff
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