Skip to content

vcf2maf v1.2
Compare
Choose a tag to compare
@ckandoth ckandoth released this 09 Apr 21:48
v1.2.0
4609319
  • Now parses out tumor/normal allele read counts from VCF to print in MAF
  • Handles multi-allelic variant sites by choosing allele with highest read support
  • Support for complex indels that include substitutions
  • New test VCFs for MuTect and VarScan

Note: VCFs from VarScan use hardcoded sample IDs TUMOR and NORMAL in the genotype columns, that likely differ from the real sample barcodes that you want to report in the MAF using --tumor-id and --normal-id. This caveat can now be handled with --vcf-tumor-id TUMOR --vcf-normal-id NORMAL.

Assets 2
Loading