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hmsm fit-ghmm #78
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Did you check |
It was a qsub job that ended without any errors. :-/ |
Did you collect both stdout and stderr? Maybe the error only went to stderr? On Thu, Mar 13, 2014 at 11:05 AM, Carlos Hernández <notifications@github.com
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Maybe you can try fitting on only a subset of the trajectories (like 1) of On Thu, Mar 13, 2014 at 11:14 AM, Robert McGibbon rmcgibbo@gmail.comwrote:
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Yeah, I did, but stderr was empty. I'll try your suggestion. |
I looked through the code on master again -- nothing jumped out at me. On Thu, Mar 13, 2014 at 11:18 AM, Carlos Hernández <notifications@github.com
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Okay, running the job interactive, it's at the 3-hour mark and still running according to
Can I ignore this warning, or will the results be severely affected? |
new warning, this time self-explanatory:
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The line search failure is fairly typical, and not catastrophic. I haven't seen the 'too many function evaluations before', but I don't think it's catastrophic either. It basically means that the transition matrix might not be 100% optimized, but it'll still usually be a pretty good solution (near the local minimum, it just didn't quite converge.) How many states are you using? |
Around 10 with 8 lag times each |
To clarify: ten different states (4,5,7,10,12,15,20,25,30,25,40) |
The cost scales with the cube of the number of the states. I haven't actually tried over ~10 states myself. You have a lot of data too. I'm reasonably confident that your calculation is just taking a long time -- not dying unexpectedly. |
Yeah, it seems like it. But it still doesn't explain why qsub shortchanges my walltime.... I'll go bother the proclus admins then. Thanks Robert! |
Not sure exactly what the issue is, but this latest commit doesn't work on my project. I just get a blank json file and stops after:
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