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Releases: mt1022/cubar

Release v0.5.1

24 Apr 13:34
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  • fixed a bug in get_cscg that caused an error when the input codon frequency matrix has a single row.
  • added unit tests for all functions and internal data.

Full Changelog: v0.5.0...v0.5.1

Release v0.5.0

28 Dec 03:08
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  • fixed a bug in est_trna_weight. Now zero w values were replaced with
    geometric mean (rather than the arithmetic mean) of non-zero w values.
  • fixed unexpected warnings in est_optimal_codons.
  • fixed bugs that update input codon table due to data.table reference
    semantics.
  • added a new vignette about the mathematical details of implementation.

v0.4.2

19 Nov 06:27
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  • New vignette for mitochondrial codon usage analysis.
  • Fix a bug when in get_enc for non-standard genetic code.
  • Formatting vignettes.
  • New sample data human_mt for human mitochondrial protein CDS sequences.

cubar 0.4.0

19 Jul 03:47
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v0.4.0

update description and show_codon_tables doc