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keeping terminal repeats #9
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Xabi, Thanks for your kind words. I hope using the flag If you still want the re-orientation behavior but want the DTRs as well, you'll have to come up with a custom downstream solution after running this tool with Unrelatedly, if you notice that this tool is missing any hallmark genes on your very weird viruses, it would help me out if you could share those protein sequences (to be included in database updates). This would totally be up to you, of course. Mike |
I completely misunderstood the wrap function 🤦 Without getting into details, despite being a jumbo virus according to the genome size is hard to say if it belongs to any known class. I noticed that many of the evidences coming from PDB derive from complexes so it is the |
Hi there,
First at all, I must say this is the only program that got to annotate many of the normal viral marker genes in a very weird virus we are working on.
Second, is there a way to keep the terminal repeats at both ends after re-circularisation? Quite a few tools for downstream analysis e.g. CheckV don't like it when they are missing.
Thank you in advance,
Xabi
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