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mtw committed Feb 11, 2015
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9 changes: 5 additions & 4 deletions scripts/Tutorial_pipeline02.pl
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#!/usr/bin/env perl
# Last changed Time-stamp: <2015-02-10 15:58:26 fall>
# Last changed Time-stamp: <2015-02-11 17:40:08 mtw>
# AUTHOR: Joerg Fallmann <joerg.fallmann@univie.ac.at>

###############
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We start from a file containing ENSEMBL annotation information for
human protein-coding genes, which have a read pileup of at least 1001
reads in an ENCODE dataset mapped with F<segemehl>. We are insterested
reads in an ENCODE dataset mapped with F<segemehl>. We are interested
in visualizing those genes together with a 50nt region upstream of the
gene start. As such, will go through the individual steps required for
gene start. We will go through the individual steps required for
preparation of the files for subsequent UCSC Track Hub visualization
covered by L<Tutorial_pipeline03.pl|http://search.cpan.org/dist/Bio-ViennaNGS/scripts/Tutorial_pipeline03.pl> .
covered by
L<Tutorial_pipeline03.pl|http://search.cpan.org/dist/Bio-ViennaNGS/scripts/Tutorial_pipeline03.pl>.
=head2 PREREQUITES
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