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Bio::ViennaNGS v0.11
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@mtw mtw released this 10 Dec 16:46
· 504 commits to master since this release
v0.11
9591195
  • integrated Bio::ViennaNGS::AnnoC
  • integrated Bio::ViennaNGS::Fasta
  • removed obsolete bam2bw()
  • added scripts/bam_to_bigwig.pl
  • added scripts/bed2bedGraph.pl
  • added scripts/extend_bed.pl
  • added scripts/kmer_analysis.pl
  • added scripts/MEME_XML_motif_extractor.pl
  • added scripts/trim_fastq.pl
  • refactored scripts/bam_to_bigwig.pl
  • refactored scripts/splice_site_summary.pl
  • refactored scripts/bam_split.pl
  • refactored scripts/gff2bed.pl
  • added Moose-based classes for feature handling
  • renamed bed2bw() to bam_or_bed2bw() and refactored it accordingly to properly handle BAM files
  • added '-split' option to 'genomeCoverageBed' call in bam_or_bed2bw()
  • updated MakeMaker scripts (MANIFEST and Makefile.PL)
  • minimum version of Bio::Root::Version is now 1.00690001
  • added some tests
  • ship demo files in share/ folder
  • updated POD and README
Assets 2