fixing bug in mid_sagittal align

muschellij2 · Nov 25, 2019 · 7593b40 · 7593b40
1 parent 5925a95
commit 7593b40
Showing 1 changed file with 8 additions and 4 deletions.
diff --git a/R/mid_sagittal_align.R b/R/mid_sagittal_align.R
@@ -70,10 +70,14 @@ mid_sagittal_align = function(
     verbose = verbose,
     retimg = FALSE,
     outfile = tfile)
-  centered = reverse_rpi_orient_file(
-    file = tfile, 
-    orientation = rp$orientation,
-    convention = rp$convention)
+  if (force_rpi) {
+    centered = reverse_rpi_orient_file(
+      file = tfile, 
+      orientation = rp$orientation,
+      convention = rp$convention)
+  } else {
+    centered = tfile
+  }
   if (retimg) {
     centered = readnii(centered)
   }