Merge pull request #2 from mwalmsley/dev

Add v0.02 changes. Saving new shards and training from scratch both run without errors. Full checks are in progress but slow. I am slightly concerned that refactoring or new tf version has made the old weights checkpoints not work - I am creating new ones as part of the checks above.
mwalmsley · Oct 4, 2021 · 1d3511e · 1d3511e
2 parents dcb89d4 + 0ad2905
commit 1d3511e
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diff --git a/.gitignore b/.gitignore
@@ -130,4 +130,24 @@ dmypy.json
 
 *.csv
 
-wandb_api.txt
+wandb_api.txt
+
+*.pdf
+*.png
+
+settings.json
+
+personal_examples.md
+*.sh
+*.parquet
+*.tfrecord
+
+# tensorboard data files
+events.out*
+*.json
+checkpoint*
+
+# mac junk
+.DS_Store
+
+.vscode
diff --git a/.readthedocs.yaml b/.readthedocs.yaml
diff --git a/.vscode/settings.json b/.vscode/settings.json
@@ -1,3 +1,4 @@
 {
-    "python.pythonPath": "/home/walml/anaconda3/envs/zoobot/bin/python"
+    "python.pythonPath": "/home/walml/anaconda3/envs/zoobot/bin/python",
+    "restructuredtext.confPath": "${workspaceFolder}/docs"
 }
diff --git a/LICENSE b/LICENSE
diff --git a/README.md b/README.md
@@ -2,7 +2,7 @@
 
 [![Documentation Status](https://readthedocs.org/projects/zoobot/badge/?version=latest)](https://zoobot.readthedocs.io/en/latest/?badge=latest)
 
-Zoobot classifies galaxy morphology with deep learning. This code will let you: 
+Zoobot classifies galaxy morphology with deep learning. This code will let you:
 
 - **Reproduce** and improve the Galaxy Zoo DECaLS automated classifications
 - **Finetune** the classifier for new tasks
@@ -30,20 +30,27 @@ training_config.train_estimator(
 )
 ```
 
-Install with `pip install zoobot`. Zoobot requires Tensorflow >= 2.3.
+Install using git and pip:
+    git clone git@github.com:mwalmsley/zoobot.git
+    pip install -r zoobot/requirements.txt (virtual env or conda highly recommended)
+    pip install -e zoobot
+The `main` branch is for stable-ish releases. The `dev` branch includes the shiniest features but may change at any time.
 
-To get started, see the [documentation](https://zoobot.readthedocs.io/). 
+To get started, see the [documentation](https://zoobot.readthedocs.io/).
 
-I also include some working examples for you to copy and adapt: 
+I also include some working examples for you to copy and adapt:
 
 - [train_model.py](https://github.com/mwalmsley/zoobot/blob/main/train_model.py)
 - [make_predictions.py](https://github.com/mwalmsley/zoobot/blob/main/make_predictions.py)
 - [finetune_minimal.py](https://github.com/mwalmsley/zoobot/blob/main/finetune_minimal.py)
 - [finetune_advanced.py](https://github.com/mwalmsley/zoobot/blob/main/finetune_advanced.py)
 
+Latest cool features on dev branch (June 2021):
 
-Contributions are welcome and will be credited in any future work.
+- Multi-GPU distributed training
+- Support for Weights and Biases (wandb)
+- Worked examples for custom representations
 
+Contributions are welcome and will be credited in any future work.
 
 If you use this repo for your research, please cite [the paper](https://arxiv.org/abs/2102.08414).
-
diff --git a/create_shards.py b/create_shards.py
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diff --git a/data/decals/shards/.gitkeep b/data/decals/shards/.gitkeep
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