Merge pull request #59 from mwalmsley/finetune

Add PyTorch Finetuning Capability, Examples
mwalmsley · Nov 15, 2022 · 85a975c · 85a975c
2 parents 1bb4dfe + 425076a
commit 85a975c
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diff --git a/.gitignore b/.gitignore
@@ -158,3 +158,7 @@ data/example_images/advanced_old
 data/external
 *.jpg
 *.tar.gz
+data/example_images/cosmic_dawn
+data/cosmic_dawn*.parquet
+
+results
diff --git a/benchmarks/pytorch/train_model_on_decals_dr5_splits.py b/benchmarks/pytorch/train_model_on_decals_dr5_splits.py
@@ -6,7 +6,7 @@
 from sklearn.model_selection import train_test_split
 from pytorch_lightning.loggers import WandbLogger
 
-from galaxy_datasets import gz_decals
+from galaxy_datasets import gz_decals_5
 
 from zoobot.shared import label_metadata, schemas
 from zoobot.pytorch.training import train_with_pytorch_lightning
@@ -44,8 +44,8 @@
     logging.info('Schema: {}'.format(schema))
 
     # use the gz_decals() methods in galaxy_datasets.prepared_datasets to get the canonical (i.e. standard) train and test catalogs
-    canonical_train_catalog, _ = gz_decals(root=args.data_dir, train=True, download=True)
-    canonical_test_catalog, _ = gz_decals(root=args.data_dir, train=False, download=True)
+    canonical_train_catalog, _ = gz_decals_5(root=args.data_dir, train=True, download=True)
+    canonical_test_catalog, _ = gz_decals_5(root=args.data_dir, train=False, download=True)
 
     train_catalog, val_catalog = train_test_split(canonical_train_catalog, test_size=0.1)
     test_catalog = canonical_test_catalog.copy()

diff --git a/benchmarks/tensorflow/train_model_on_decals_dr5_splits.py b/benchmarks/tensorflow/train_model_on_decals_dr5_splits.py
@@ -6,7 +6,7 @@
 import wandb
 from sklearn.model_selection import train_test_split
 
-from galaxy_datasets import gz_decals
+from galaxy_datasets import gz_decals_5
 
 from zoobot.shared import label_metadata, schemas
 from zoobot.tensorflow.training import train_with_keras
@@ -69,8 +69,8 @@
         download = False
     else:
         download = True
-    canonical_train_catalog, _ = gz_decals(root=args.data_dir, train=True, download=download)
-    canonical_test_catalog, _ = gz_decals(root=args.data_dir, train=False, download=download)
+    canonical_train_catalog, _ = gz_decals_5(root=args.data_dir, train=True, download=download)
+    canonical_test_catalog, _ = gz_decals_5(root=args.data_dir, train=False, download=download)
 
     train_catalog, val_catalog = train_test_split(canonical_train_catalog, test_size=0.1)  # could add random_state
     test_catalog = canonical_test_catalog.copy()

diff --git a/data/decals/prepared_catalogs/.gitkeep b/data/decals/prepared_catalogs/.gitkeep
diff --git a/data/decals/shards/.gitkeep b/data/decals/shards/.gitkeep
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