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Scripts to parse commonly used biological data format and to modularize commonly used functions or classes

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lab-modules

  • This project is for my lab works.
  • This package contains modules or classes which are commonly used when processing the biological data.
  • The modules in this package assume that this folder is registered as a PYTHON_PATH.

Dependency

pytest >= 3.2.1

Installation

git clone git@github.com:jeongmw/lab-modules.git
python3 setup.py install

Components

1. lab/gene

2. lab/genome

3. lab/peak

4. lab/vcf

5. lab/settings

6. lab/utils

Testing

  • Look at the directory tests/
  • Use pytest

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Scripts to parse commonly used biological data format and to modularize commonly used functions or classes

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