Merge pull request #3 from nagornovys/ChangeForRelease

Change for release
nagornovys · Nov 9, 2019 · 1c29cc6 · 1c29cc6
2 parents 28c5581 + 58bce19
commit 1c29cc6
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diff --git a/README.md b/README.md
@@ -1,8 +1,3 @@
----
-output:
-  pdf_document: default
-  html_document: default
----
 tugHall version 1.1
 ====================
 

diff --git a/README.pdf b/README.pdf
diff --git a/USER-GUIDE-tugHall.pdf b/USER-GUIDE-tugHall.pdf
diff --git a/User-Guide-analysis.Rmd → User-Guide-Analysis.Rmd b/User-Guide-analysis.Rmd → User-Guide-Analysis.Rmd
diff --git a/User-Guide-analysis.html → User-Guide-Analysis.html b/User-Guide-analysis.html → User-Guide-Analysis.html
diff --git a/USER-GUIDE-Analysis.pdf → User-Guide-Analysis.pdf b/USER-GUIDE-Analysis.pdf → User-Guide-Analysis.pdf
diff --git a/User-Guide-tugHall.Rmd b/User-Guide-tugHall.Rmd
@@ -67,10 +67,14 @@ The code has its initial input parameters and input files in the **/Input/** fol
 
 **User-Guide-tugHall.html** - user guide for simulation in the html format.
 
+**User-Guide-tugHall.pdf** - user guide for simulation in the pdf format.
+
 **User-Guide-Analysis.Rmd** - user guide for analysis and report generation in the Rmd format.
 
 **User-Guide-Analysis.html** - user guide analysis and report generation in the html format.
 
+**User-Guide-Analysis.html** - user guide analysis and report generation in the pdf format.
+
 dir **/tugHall/** - directory that contains the program.  
 
 <br />
@@ -356,6 +360,6 @@ or using the line by line procedure in **R Studio**. In this case we have:
   - run the *model()* function to simulate;
   - run **`source("Code/Analysis.R")`** in order to analyze the results and plot the figures in the dialogue box (see **User-Guide-Analysis**).
 
-4. To make a report of the simulation, please, use the **User-Guide-Analysis.RMD**. 
-In the User-Guide-Analysis.RMD, commands are embeded to include files under Output/ and Figure/. So, after analysis with tugHall, you can generate analysis report automatically from the User-Guide-Analysis.RMD. with knitr or something else. For more details, please, see "Writing reproducible reports in R" on the github (https://nicercode.github.io/guides/reports/). For more details, please, see **User-Guide-Analysis**. 
+4. To obtain analysis reports of the simulation, please refer to **User-Guide-Analysis.RMD**. 
+In **User-Guide-Analysis.RMD**, commands are embeded to include files under **Output/** and **Figure/**. So, after analysis with tugHall, you can generate analysis reports automatically from **User-Guide-Analysis.RMD**. For more details, please refer to "Writing reproducible reports in R" on the github (https://nicercode.github.io/guides/reports/).
 
diff --git a/User-Guide-tugHall.html b/User-Guide-tugHall.html
diff --git a/User-Guide-tugHall.pdf b/User-Guide-tugHall.pdf