Shasta on LatchBio

Quickstart

1. Download test input (fasta) and configuration (conf) files from here
2. Create an input directory on dashboard and upload your data
3. Add wf.shasta to your workspace from explore
4. Go to your workflows and open wf.shasta tool
5. Provide the input directory where fasta file is uploaded and also select the conf file
6. Launch the workflow

About Shasta

The goal of Shasta is to rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells.

Links

• Configuration Presets: https://github.com/chanzuckerberg/shasta/tree/master/conf
• Source Code: https://github.com/chanzuckerberg/shasta
• Documentation: https://chanzuckerberg.github.io/shasta
• Workflow Code: https://github.com/nahid18/shasta

How to cite

• Paper: https://www.nature.com/articles/s41587-020-0503-6
• Acknowledgements to external packages: https://chanzuckerberg.github.io/shasta/Acknowledgments.html