-
Notifications
You must be signed in to change notification settings - Fork 1
/
readme-assembly-workflow.cwl
58 lines (54 loc) · 1.16 KB
/
readme-assembly-workflow.cwl
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
#! /usr/bin/env cwl-runner
cwlVersion: v1.0
class: Workflow
#requirements:
inputs:
tree: string[]
scientific_name: string[]
organization: string
url_genomic_fasta: string[]
link_to_publication: string
steps:
#step1 create_yml_File
create_readme:
run: create_readme.cwl
in: []
out:
[readme_file]
#step2 write_First_Line
writeFirstLine:
run: writeFirstLine.cwl
in:
readme_file: create_readme/readme_file
organization: organization
out:
[out_readme_file]
#step3 write url
writeURL:
run: writeURL.cwl
in:
readme_file: writeFirstLine/out_readme_file
url: url_genomic_fasta
out:
[out_readme_file]
#step4 write Information
writeInfo:
run: writeInfo.cwl
in:
readme_file: writeURL/out_readme_file
tree: tree
scientific_name: scientific_name
link_to_publication: link_to_publication
out:
[out_readme_file]
#step5 write last line
writeLastLine:
run: writeLastLine.cwl
in:
readme_file: writeInfo/out_readme_file
out:
[out_readme_file]
outputs:
readme_file:
type: File
outputSource: create_readme/readme_file