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This is almost fully completed with the new librarian module, and specifically the librarian.gen_lib interface. Some cleanup of command-line arguments, and streamlining how they are handled, is still possible. Leave that for a future issue.
(1) combine SS and 'normal' functions/interfaces to use options instead of separate functions
(2) move all reusable materials from
gen_lib_sam.py
tolibrarian.py
(3) add option whether or not to perform fits (consider just moving fits to a post-processing step, instead of concurrent with lib gen)
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