Oxford Nanopore Human Reference Datasets
Notes on downloading files.
Files are generously hosted by Amazon Web Services. Although available as straight-forward HTTP links, download performance is improved by using the Amazon Web Services command-line interface. References should be amended to use the
s3:// addressing scheme, i.e. replace
s3://nanopore-human-wgs to download. For example, to download
rel3-nanopore-wgs-288418386-FAB39088 to the current working directory use the following command.
aws s3 cp s3://nanopore-human-wgs/rel3-nanopore-wgs-288418386-FAB39088.fastq.gz .
max_concurrent_requests etc. settings as per this guide will improve download performance further.
Please raise issues on this Github repository concerning this dataset.
* rel1: 1st December 2016. Initial release. * rel2: 5th December 2016. 25 flowcells, 58958035887 bases, 9053909 reads * rel3: 39 flowcells, 91240120433 bases, 14183584 reads * rel4: added additional 14 flowcells, 23140190547 bases, 1415868 reads * rel5 release: June 2018. All data basecalled with Guppy 0.3 (10kb chunk size) * rel6 release: July 2019. All files converted to multi-fast5 format and basecalled with Guppy 2.3.8+HAC model. * rel1 RNA: 30th November 2017. 30 flowcells (native RNA), 12 flowcells (1D cDNA)