H. pylori early-life microbiome study

This repo houses the analysis for the Helicobacter study and can be reproduced following the steps listed below. The full analysis can be found here.

Mamba and Docker are required to recreate the analysis conducted for this manuscript. If that software is not installed instructions for their installation can be found in the links above.

git clone git@github.com:nasiegel88/H.pylori-siegel_et_al_2022.git

mamba create -n repo2docker -c conda-forge jupyter-repo2docker
conda activate repo2docker

jupyter-repo2docker --editable .