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Simplify implicit snippy dependencies.
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biocontainer tar doesn't support tar -z
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jmchilton committed Nov 14, 2019
1 parent ed9b518 commit 766c2bd
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion tools/snippy/snippy.xml
Expand Up @@ -54,7 +54,7 @@
#end if
mkdir -p ${dir_name} && cp -r out/reference out/snps.tab out/snps.aligned.fa out/snps.vcf ${dir_name}/ &&
tar -czf out.tgz ${dir_name}
tar -cf - ${dir_name} | gzip > out.tgz
#if "outcon" in str($outputs) and $adv.rename_cons
&& sed -i 's/>.*/>${dir_name}/' out/snps.consensus.fa
#end if
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