Just a repository to store sequence bioinformatics microbenchmark and script to produce graph.
- plotly
Run benchmark:
cargo bench -- cano_iter
Open target/criterion/iter_cano/report/index.html
to see criterion report.
Run benchmark:
cargo bench -- nuc2bit
Open target/criterion/nuc2bit/report/index.html
to see criterion report.
Or you can generate altair plot:
python -m fbio nuc2bit -o nuc2bit.[html|png|svg|json] -s (subsample, default 50) -f {regex to filter out some dataset}...