fix(doc): Remove gitpod stuff

.github/workflows/mkdocs.yml

@@ -26,7 +26,16 @@ jobs:
         run: pdm lock -v
 
       - name: Install dependencies
-        run: pdm install -G duty -G docs -G quality -G typing -G security
+        run: pdm install -G duty -G docs -G tests
 
-      - name: Deploying documentation
+      - name: Run test
+        run: pdm run duty test
+
+      - name: Run coverage
+        run: pdm run duty coverage
+
+      - name: Build documentation
+        run: pdm run duty check-docs
+
+      - name: Deploy documentation
         run: pdm run duty docs-deploy

Makefile

@@ -45,8 +45,8 @@ check:
 
 .PHONY: $(BASIC_DUTIES)
 $(BASIC_DUTIES):
-	@$(DUTY) $@ $(call args,$@)
+	$(DUTY) $@ $(call args,$@)
 
 .PHONY: $(QUALITY_DUTIES)
 $(QUALITY_DUTIES):
-	@PDM_MULTIRUN_VERSIONS="3.9 3.10 3.11" pdm multirun duty $@ $(call args,$@)
+	PDM_MULTIRUN_VERSIONS="3.9 3.10 3.11" pdm multirun duty $@ $(call args,$@)

README.md

@@ -1,24 +1,23 @@
 # VariantPlanner
 
-[![ci](https://github.com/natir/variantplanner/workflows/ci/badge.svg)](https://github.com/natir/variantplanner/actions?query=workflow%3Aci)
-[![documentation](https://img.shields.io/badge/docs-mkdocs%20material-blue.svg?style=flat)](https://natir.github.io/variantplanner/)
+[![ci](https://github.com/natir/variantplanner/actions/workflows/ci.yml/badge.svg)](https://github.com/natir/variantplanner/actions/workflows/ci.yml)
+[![doc](https://img.shields.io/badge/docs-mkdocs%20material-blue.svg?style=flat)](https://natir.github.io/variantplanner/)
 [![pypi version](https://img.shields.io/pypi/v/variantplanner.svg)](https://pypi.org/project/variantplanner/)
-[![gitpod](https://img.shields.io/badge/gitpod-workspace-blue.svg?style=flat)](https://gitpod.io/#https://github.com/natir/variantplanner)
-[![gitter](https://badges.gitter.im/join%20chat.svg)](https://gitter.im/variantplanner/community)
+
 
 A tool kit to manage many variant on desktop computer
 
 ## Installation
 
 With `pip`:
 ```bash
-pip install variantplanner
+pip install git+https://github.com/natir/variantplanner.git#egg=variantplanner
 ```
 
 With [`pipx`](https://github.com/pipxproject/pipx):
 ```bash
-python3.8 -m pip install --user pipx
-pipx install variantplanner
+python -m pip install --user pipx
+pipx install git+https://github.com/natir/variantplanner.git#egg=variantplanner
 ```
 
 ## Usage
@@ -102,41 +101,6 @@ variantplanner metadata -i metadata.json -o metadata.parquet json -f sample -f l
 variantplanner metadata -i metadata.csv -o metadata.parquet csv -c sample -c link -c kindex
 ```
 
-## Developement setup
-
-Initialisation step:
-
-```
-git clone git@github.com:natir/VariantPlanner.git
-cd VariantPlanner
-pyenv install 3.9 3.10 3.11 # take care of solving build warning
-make setup
-```
-
-Working step:
-
-```
-git switch -c <your_branch_name>
-
-<write code>
-make format  # to auto-format the code
-
-<write tests>
-make test  # to run the test suite
-
-make check  # to check if everything is OK
-
-<commit your changes>
-```
-
-Please try to follow this commit message convention:
+## Contribution
 
-```
-<type>(<scope>): <short summary>
-  │       │             │
-  │       │             └─⫸ Summary in present tense. Not capitalized. No period at the end.
-  │       │
-  │       └─⫸ Commit Scope: io|format_conversion|data_manipulation|(other)
-  │
-  └─⫸ Commit Type: build|ci|docs|feat|fix|perf|refactor|test|(other)
-```
+All contributions are welcome, [see our "How to contribute" page.](https://natir.github.io/variantplanner/contributing/)

duties.py

@@ -182,7 +182,7 @@ def docs_deploy(ctx: Context) -> None:
     Parameters:
         ctx: The context instance (passed automatically).
     """
-    ctx.run(mkdocs.gh_deploy, title="Deploying documentation")
+    ctx.run(mkdocs.gh_deploy(force=True), title="Deploying documentation")
 
 
 @duty