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Another delta
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jefferis committed Feb 6, 2020
1 parent 17e6e80 commit 7a1d993
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4 changes: 2 additions & 2 deletions R/morphometry.R
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#'
#' @description Generates an 'overlap matrix' of overlap scores between neurons in the \code{outputneurons} and \code{inputneurons} pools.
#' For every point in a given neuron in \code{outputneurons}, a distance score is calculated to every point in a neuron in \code{inputneurons}.
#' The sum of this score is added to the final output matrix. The score is calculated as \code{e(-d^2/2δ^2)}, where d is the euclidean distance between the two points,
#' and δ is the expected distance in um that is considered 'close'. It is recommended that the user resamples neurons before use, using \code{\link{resample}}.
#' The sum of this score is added to the final output matrix. The score is calculated as \code{e(-d^2/(2*delta^2))}, where d is the euclidean distance between the two points,
#' and delta is the expected distance in um that is considered 'close'. It is recommended that the user resamples neurons before use, using \code{\link{resample}}.
#'
#' @param outputneurons first set of neurons
#' @param inputneurons second set of neurons
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4 changes: 2 additions & 2 deletions man/overlap_score.Rd

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