apples2-support-data

This repository contains data used in "Distance-based phylogenetic placement with statistical support" (https://doi.org/10.3390/biology11081212).

-prerequisites

1. linux, bash, anaconda (miniconda)
2. Download apples-2-support from https://github.com/navidh86/apples
3. Create the following conda environment and use it for further analysis: "conda create -y -c bioconda --name apples_support python=3.7 pip fasttree=2.1.10 gappa=0.7.1 newick_utils=1.6 pplacer epa-ng dendropy taxtastic setuptools"