Version 3.0.8

This release fixes a bug with caching the hierarchical annotations in Windows.

Version 3.0.7

• small fix for connectivity queries when filtered=True in the public dataset
• queries against Github (for hierarchical annotations) will now use personal access token defined
  in GITHUB_PAT if present; this avoids issues with rate limits

Version 3.0.6

Two small improvements:

• (hierarchical) annotations can now be loaded from a specific (or just the latest) commit
• re-enabled synapse queries against the raw (filtered=False) synapse table for the public dataset

Version 3.0.5

This release fixes issues in flywire.get_adjacencies and flywire.get_connectivity when the query was against the live dataset.

Version 3.0.4

This version fixes an accidentally introduced bottleneck in is_valid_root which caused a bunch of other functions to become sluggish.

Version 3.0.3

Various bugfixes and improvements:

1. is_proofread (which is also used for connectivity queries) should now work with the public release data (see docstring for details)
2. get_cave_table will now optionally add user details (unclear if this works on public data)
3. various fixes for get_somas, find_mat_version, is_valid_root and is_latest_root

Version 3.0.2

Another small bug fix that caused search_annotations to fail when local cache was empty.

Version 3.0.1

This is a bug fix release:

1. Fixes an issue in search_community_annotations where adding user information for non-existent user "0" would fail
2. Prevents trying to query the live version if working with the public release datastack

Version 3.0.0

This is a major update with a few breaking changing!

Highlights:

• The default dataset is now the "public" dataset.
• It is now easy to work with annotations (classes, types, etc) instead of having to shuttle root IDs in and out of fafbseg functions; see the updated tutorial on annotations.
• Annotation queries will download (and cache) data from https://github.com/flyconnectome/flywire_annotations which is currently principally based on Schlegel et al. (2023). We are planning to keep updating these annotations in the future.

We also renamed a bunch of functions to make things more consistent, please see the Changelog for details.

Version 2.0.3

One fix, one improvement:

• flywire.fetch_connectivity now allows neuropils=True to return edges broken
  down by neuropils
• fix flywire.predict_neuropils with single_pred=True