This repository collects code used as part of analyses conducted by the working group. A preprint of the group's work can be found on BioArxiv.
The NCBI Variant Calling Pipeline can be found here.
The EDGE COVID-19 pipeline can be found here.
The SARS-CoV-2 variant analysis workflows of the Galaxy project can be found here.
The ATCC/BEI Variant Calling Pipeline can be found here.